PhD candidate
e-mail: s [dot] g [dot] m [dot] vanvelzen [at] amsterdamumc [dot] nl
Phone: +31 56 60226
LinkedIn; Google Scholar
Sanne van Velzen studied Medical Natural Sciences at the Free University in Amsterdam, a broad study that combines mathematics, chemistry and physics and applies it in the medical field. In 2016 she received her Master of Science degree in Medical Natural Sciences with the specialization in medical imaging.
Her master thesis focused on analysis of cardiac PET images of a newly developed tracer in nuclear imaging and on analysis of PET image reconstructions. Sanne joined the Quantitative Medical Image Analysis Group in September 2016, where she is working on Automated cardiovascular risk prediction in breast cancer patients undergoing radiotherapy treatment planning CT.
Journal Articles |
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1. | S.G.M. van Velzen, N. Lessmann, B.K. Velthuis, I.E.M. Bank, D.H.J.G. van den Bongard, T. Leiner, P. A. de Jong, W. B. Veldhuis, A. Correa, J.G. Terry, J.J. Carr, M.A. Viergever, H.M. Verkooijen, I. Išgum Deep learning for automatic calcium scoring in CT: validation using multiple cardiac CT and chest CT protocols Journal Article Radiology, 295 (1), 2020. @article{vanVelzen2020, title = {Deep learning for automatic calcium scoring in CT: validation using multiple cardiac CT and chest CT protocols }, author = {S.G.M. van Velzen, N. Lessmann, B.K. Velthuis, I.E.M. Bank, D.H.J.G. van den Bongard, T. Leiner, P. A. de Jong, W. B. Veldhuis, A. Correa, J.G. Terry, J.J. Carr, M.A. Viergever, H.M. Verkooijen, I. Išgum}, doi = {https://doi.org/10.1148/radiol.2020191621}, year = {2020}, date = {2020-02-11}, journal = {Radiology}, volume = {295}, number = {1}, abstract = {Background Although several deep learning (DL) calcium scoring methods have achieved excellent performance for specific CT protocols, their performance in a range of CT examination types is unknown. Purpose To evaluate the performance of a DL method for automatic calcium scoring across a wide range of CT examination types and to investigate whether the method can adapt to different types of CT examinations when representative images are added to the existing training data set. Materials and Methods The study included 7240 participants who underwent various types of nonenhanced CT examinations that included the heart: coronary artery calcium (CAC) scoring CT, diagnostic CT of the chest, PET attenuation correction CT, radiation therapy treatment planning CT, CAC screening CT, and low-dose CT of the chest. CAC and thoracic aorta calcification (TAC) were quantified using a convolutional neural network trained with (a) 1181 low-dose chest CT examinations (baseline), (b) a small set of examinations of the respective type supplemented to the baseline (data specific), and (c) a combination of examinations of all available types (combined). Supplemental training sets contained 199–568 CT images depending on the calcium burden of each population. The DL algorithm performance was evaluated with intraclass correlation coefficients (ICCs) between DL and manual (Agatston) CAC and (volume) TAC scoring and with linearly weighted κ values for cardiovascular risk categories (Agatston score; cardiovascular disease risk categories: 0, 1–10, 11–100, 101–400, >400). Results At baseline, the DL algorithm yielded ICCs of 0.79–0.97 for CAC and 0.66–0.98 for TAC across the range of different types of CT examinations. ICCs improved to 0.84–0.99 (CAC) and 0.92–0.99 (TAC) for CT protocol–specific training and to 0.85–0.99 (CAC) and 0.96–0.99 (TAC) for combined training. For assignment of cardiovascular disease risk category, the κ value for all test CT scans was 0.90 (95% confidence interval [CI]: 0.89, 0.91) for the baseline training. It increased to 0.92 (95% CI: 0.91, 0.93) for both data-specific and combined training. Conclusion A deep learning calcium scoring algorithm for quantification of coronary and thoracic calcium was robust, despite substantial differences in CT protocol and variations in subject population. Augmenting the algorithm training with CT protocol–specific images further improved algorithm performance.}, keywords = {}, pubstate = {published}, tppubtype = {article} } Background Although several deep learning (DL) calcium scoring methods have achieved excellent performance for specific CT protocols, their performance in a range of CT examination types is unknown. Purpose To evaluate the performance of a DL method for automatic calcium scoring across a wide range of CT examination types and to investigate whether the method can adapt to different types of CT examinations when representative images are added to the existing training data set. Materials and Methods The study included 7240 participants who underwent various types of nonenhanced CT examinations that included the heart: coronary artery calcium (CAC) scoring CT, diagnostic CT of the chest, PET attenuation correction CT, radiation therapy treatment planning CT, CAC screening CT, and low-dose CT of the chest. CAC and thoracic aorta calcification (TAC) were quantified using a convolutional neural network trained with (a) 1181 low-dose chest CT examinations (baseline), (b) a small set of examinations of the respective type supplemented to the baseline (data specific), and (c) a combination of examinations of all available types (combined). Supplemental training sets contained 199–568 CT images depending on the calcium burden of each population. The DL algorithm performance was evaluated with intraclass correlation coefficients (ICCs) between DL and manual (Agatston) CAC and (volume) TAC scoring and with linearly weighted κ values for cardiovascular risk categories (Agatston score; cardiovascular disease risk categories: 0, 1–10, 11–100, 101–400, >400). Results At baseline, the DL algorithm yielded ICCs of 0.79–0.97 for CAC and 0.66–0.98 for TAC across the range of different types of CT examinations. ICCs improved to 0.84–0.99 (CAC) and 0.92–0.99 (TAC) for CT protocol–specific training and to 0.85–0.99 (CAC) and 0.96–0.99 (TAC) for combined training. For assignment of cardiovascular disease risk category, the κ value for all test CT scans was 0.90 (95% confidence interval [CI]: 0.89, 0.91) for the baseline training. It increased to 0.92 (95% CI: 0.91, 0.93) for both data-specific and combined training. Conclusion A deep learning calcium scoring algorithm for quantification of coronary and thoracic calcium was robust, despite substantial differences in CT protocol and variations in subject population. Augmenting the algorithm training with CT protocol–specific images further improved algorithm performance. |
2. | N. Hampe, J.M. Wolterink, S.G.M. van Velzen, T. Leiner, I. Išgum Machine learning for assessment of coronary artery disease in cardiac CT: a survey Journal Article Frontiers in Cardiovascular Medicine, 6 (172), 2019. @article{Hampe2019, title = {Machine learning for assessment of coronary artery disease in cardiac CT: a survey}, author = {N. Hampe, J.M. Wolterink, S.G.M. van Velzen, T. Leiner, I. Išgum}, doi = {10.3389/fcvm.2019.00172}, year = {2019}, date = {2019-11-26}, journal = {Frontiers in Cardiovascular Medicine}, volume = {6}, number = {172}, abstract = {Cardiac computed tomography (CT) allows rapid visualization of the heart and coronary arteries with high spatial resolution. However, analysis of cardiac CT scans for manifestation of coronary artery disease is time-consuming and challenging. Machine learning (ML) approaches have the potential to address these challenges with high accuracy and consistent performance. In this mini review, we present a survey of the literature on ML-based analysis of coronary artery disease in cardiac CT. We summarize ML methods for detection and characterization of atherosclerotic plaque as well as anatomically and functionally significant coronary artery stenosis.}, keywords = {}, pubstate = {published}, tppubtype = {article} } Cardiac computed tomography (CT) allows rapid visualization of the heart and coronary arteries with high spatial resolution. However, analysis of cardiac CT scans for manifestation of coronary artery disease is time-consuming and challenging. Machine learning (ML) approaches have the potential to address these challenges with high accuracy and consistent performance. In this mini review, we present a survey of the literature on ML-based analysis of coronary artery disease in cardiac CT. We summarize ML methods for detection and characterization of atherosclerotic plaque as well as anatomically and functionally significant coronary artery stenosis. |
3. | M.J. Emaus, I. Išgum, S.G.M. van Velzen, H.J.G.D. van den Bongard, S.A.M. Gernaat, N. Lessmann, M.G.A. Sattler, A.J. Teske, J. Penninkhof, H. Meijer, J.P. Pignol, H.M. Verkooijen; Bragatston study group BMJ Open, 9 (7), pp. e028752, 2019. @article{Emaus2019, title = {Bragatston study protocol: a multicentre cohort study on automated quantification of cardiovascular calcifications on radiotherapy planning CT scans for cardiovascular risk prediction in patients with breast cancer}, author = {M.J. Emaus, I. Išgum, S.G.M. van Velzen, H.J.G.D. van den Bongard, S.A.M. Gernaat, N. Lessmann, M.G.A. Sattler, A.J. Teske, J. Penninkhof, H. Meijer, J.P. Pignol, H.M. Verkooijen; Bragatston study group}, url = {https://doi.org/10.1136/bmjopen-2018-028752}, year = {2019}, date = {2019-07-27}, journal = {BMJ Open}, volume = {9}, number = {7}, pages = {e028752}, abstract = {NTRODUCTION: Cardiovascular disease (CVD) is an important cause of death in breast cancer survivors. Some breast cancer treatments including anthracyclines, trastuzumab and radiotherapy can increase the risk of CVD, especially for patients with pre-existing CVD risk factors. Early identification of patients at increased CVD risk may allow switching to less cardiotoxic treatments, active surveillance or treatment of CVD risk factors. One of the strongest independent CVD risk factors is the presence and extent of coronary artery calcifications (CAC). In clinical practice, CAC are generally quantified on ECG-triggered cardiac CT scans. Patients with breast cancer treated with radiotherapy routinely undergo radiotherapy planning CT scans of the chest, and those scans could provide the opportunity to routinely assess CAC before a potentially cardiotoxic treatment. The Bragatston study aims to investigate the association between calcifications in the coronary arteries, aorta and heart valves (hereinafter called \'cardiovascular calcifications\') measured automatically on planning CT scans of patients with breast cancer and CVD risk. METHODS AND ANALYSIS: In a first step, we will optimise and validate a deep learning algorithm for automated quantification of cardiovascular calcifications on planning CT scans of patients with breast cancer. Then, in a multicentre cohort study (University Medical Center Utrecht, Utrecht, Erasmus MC Cancer Institute, Rotterdam and Radboudumc, Nijmegen, The Netherlands), the association between cardiovascular calcifications measured on planning CT scans of patients with breast cancer (n≈16 000) and incident (non-)fatal CVD events will be evaluated. To assess the added predictive value of these calcifications over traditional CVD risk factors and treatment characteristics, a case-cohort analysis will be performed among all cohort members diagnosed with a CVD event during follow-up (n≈200) and a random sample of the baseline cohort (n≈600). ETHICS AND DISSEMINATION: The Institutional Review Boards of the participating hospitals decided that the Medical Research Involving Human Subjects Act does not apply. Findings will be published in peer-reviewed journals and presented at conferences.}, keywords = {}, pubstate = {published}, tppubtype = {article} } NTRODUCTION: Cardiovascular disease (CVD) is an important cause of death in breast cancer survivors. Some breast cancer treatments including anthracyclines, trastuzumab and radiotherapy can increase the risk of CVD, especially for patients with pre-existing CVD risk factors. Early identification of patients at increased CVD risk may allow switching to less cardiotoxic treatments, active surveillance or treatment of CVD risk factors. One of the strongest independent CVD risk factors is the presence and extent of coronary artery calcifications (CAC). In clinical practice, CAC are generally quantified on ECG-triggered cardiac CT scans. Patients with breast cancer treated with radiotherapy routinely undergo radiotherapy planning CT scans of the chest, and those scans could provide the opportunity to routinely assess CAC before a potentially cardiotoxic treatment. The Bragatston study aims to investigate the association between calcifications in the coronary arteries, aorta and heart valves (hereinafter called 'cardiovascular calcifications') measured automatically on planning CT scans of patients with breast cancer and CVD risk. METHODS AND ANALYSIS: In a first step, we will optimise and validate a deep learning algorithm for automated quantification of cardiovascular calcifications on planning CT scans of patients with breast cancer. Then, in a multicentre cohort study (University Medical Center Utrecht, Utrecht, Erasmus MC Cancer Institute, Rotterdam and Radboudumc, Nijmegen, The Netherlands), the association between cardiovascular calcifications measured on planning CT scans of patients with breast cancer (n≈16 000) and incident (non-)fatal CVD events will be evaluated. To assess the added predictive value of these calcifications over traditional CVD risk factors and treatment characteristics, a case-cohort analysis will be performed among all cohort members diagnosed with a CVD event during follow-up (n≈200) and a random sample of the baseline cohort (n≈600). ETHICS AND DISSEMINATION: The Institutional Review Boards of the participating hospitals decided that the Medical Research Involving Human Subjects Act does not apply. Findings will be published in peer-reviewed journals and presented at conferences. |
4. | S.A.M. Gernaat, S.G.M. van Velzen, V. Koh, M.J. Emaus, I. Išgum, N. Lessmann, S. Moes, A. Jacobson, P.W. Tan, D.E. Grobbee, D.H.J. van den Bongard, J.I. Tang, H.M. Verkooijen Radiotherapy and Oncology, 127 (3), pp. 487-492, 2018. @article{Velzen2018, title = {Automatic quantification of calcifications in the coronary arteries and thoracic aorta on radiotherapy planning CT scans of Western and Asian breast cancer patients}, author = {S.A.M. Gernaat, S.G.M. van Velzen, V. Koh, M.J. Emaus, I. Išgum, N. Lessmann, S. Moes, A. Jacobson, P.W. Tan, D.E. Grobbee, D.H.J. van den Bongard, J.I. Tang, H.M. Verkooijen}, url = {https://doi.org/10.1016/j.radonc.2018.04.011}, year = {2018}, date = {2018-04-24}, journal = {Radiotherapy and Oncology}, volume = {127}, number = {3}, pages = {487-492}, abstract = {Purpose This study automatically quantified calcifications in coronary arteries (CAC) and thoracic aorta (TAC) on breast planning computed tomography (CT) scans and assessed its reproducibility compared to manual scoring. Material and Methods Dutch (n=1,199) and Singaporean (n=1,090) breast cancer patients with radiotherapy planning CT scan were included. CAC and TAC were automatically scored using deep learning algorithm. CVD risk categories were based on Agatson CAC: 0, 1-10, 11-100, 101-400 and >400. Reliability between automatic and manual scoring was assessed in 120 randomly selected CT scans from each population, with linearly weighted kappa for CAC categories and intraclass correlation coefficient for TAC. Results Median age was higher in Dutch patients than Singaporean patients: 57 versus 52 years. CAC and TAC increased with age and were more present in Dutch patients than Singaporean patients: 24.2% versus 17.3% and 73.0% versus 62.2%, respectively. Reliability of CAC categories and TAC was excellent in the Netherlands (0.85 (95% confidence interval (CI)=0.77-0.93) and 0.98 (95% CI=0.96-0.98) respectively) and Singapore (0.90 (95% CI=0.84-0.96) and 0.99 (95% CI=0.98-0.99) respectively). Conclusions CAC and TAC prevalence was considerable and increased with age. Deep learning software is a reliable method to automatically measure CAC and TAC on radiotherapy breast CT scans.}, keywords = {}, pubstate = {published}, tppubtype = {article} } Purpose This study automatically quantified calcifications in coronary arteries (CAC) and thoracic aorta (TAC) on breast planning computed tomography (CT) scans and assessed its reproducibility compared to manual scoring. Material and Methods Dutch (n=1,199) and Singaporean (n=1,090) breast cancer patients with radiotherapy planning CT scan were included. CAC and TAC were automatically scored using deep learning algorithm. CVD risk categories were based on Agatson CAC: 0, 1-10, 11-100, 101-400 and >400. Reliability between automatic and manual scoring was assessed in 120 randomly selected CT scans from each population, with linearly weighted kappa for CAC categories and intraclass correlation coefficient for TAC. Results Median age was higher in Dutch patients than Singaporean patients: 57 versus 52 years. CAC and TAC increased with age and were more present in Dutch patients than Singaporean patients: 24.2% versus 17.3% and 73.0% versus 62.2%, respectively. Reliability of CAC categories and TAC was excellent in the Netherlands (0.85 (95% confidence interval (CI)=0.77-0.93) and 0.98 (95% CI=0.96-0.98) respectively) and Singapore (0.90 (95% CI=0.84-0.96) and 0.99 (95% CI=0.98-0.99) respectively). Conclusions CAC and TAC prevalence was considerable and increased with age. Deep learning software is a reliable method to automatically measure CAC and TAC on radiotherapy breast CT scans. |
Inproceedings |
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1. | S.G.M. van Velzen, B.D. de Vos, H.M. Verkooijen, T. Leiner, M.A. Viergever, I. Išgum Coronary artery calcium scoring: can we do better? Inproceedings In: SPIE Medical Imaging, pp. 113130G, 2020. @inproceedings{vanVelzen2020b, title = {Coronary artery calcium scoring: can we do better?}, author = {S.G.M. van Velzen, B.D. de Vos, H.M. Verkooijen, T. Leiner, M.A. Viergever, I. Išgum}, url = {https://spie.org/MI/conferencedetails/medical-image-processing#2549557}, doi = {10.1117/12.2549557}, year = {2020}, date = {2020-03-10}, booktitle = {SPIE Medical Imaging}, volume = {11313}, pages = {113130G}, abstract = {Conventional identification of coronary artery calcification (CAC) scoring uses a 130HU threshold, which may lead to under- or over-estimation of the amount of CAC. We propose a method for CAC quantification without the need for thresholding. A CycleGAN is employed to generate synthetic images without CAC from images containing CAC. By subtracting these, a CAC map is created that is used to quantify CAC. As the true amount of CAC cannot be determined, the method is evaluated through scoring reproducibility and compared with clinical CAC-scoring. The method can identify CAC lesions without thresholding and is more reproducible than clinical CAC-scoring.}, keywords = {}, pubstate = {published}, tppubtype = {inproceedings} } Conventional identification of coronary artery calcification (CAC) scoring uses a 130HU threshold, which may lead to under- or over-estimation of the amount of CAC. We propose a method for CAC quantification without the need for thresholding. A CycleGAN is employed to generate synthetic images without CAC from images containing CAC. By subtracting these, a CAC map is created that is used to quantify CAC. As the true amount of CAC cannot be determined, the method is evaluated through scoring reproducibility and compared with clinical CAC-scoring. The method can identify CAC lesions without thresholding and is more reproducible than clinical CAC-scoring. |
2. | S.G.M. van Velzen, M. Zreik, N. Lessmann, M.A. Viergever, P.A. de Jong, H.M. Verkooijen, I. Išgum Direct prediction of cardiovascular mortality from low-dose chest CT using deep learning Inproceedings In: SPIE Medical Imaging, pp. 109490X, 2019. @inproceedings{Velzen2019, title = {Direct prediction of cardiovascular mortality from low-dose chest CT using deep learning}, author = {S.G.M. van Velzen, M. Zreik, N. Lessmann, M.A. Viergever, P.A. de Jong, H.M. Verkooijen, I. Išgum}, url = {https://arxiv.org/abs/1810.02277}, doi = {10.1117/12.2512400}, year = {2019}, date = {2019-02-17}, booktitle = {SPIE Medical Imaging}, volume = {10949}, pages = {109490X}, abstract = {Cardiovascular disease (CVD) is a leading cause of death in the lung cancer screening population. Chest CT scans made in lung cancer screening are suitable for identification of participants at risk of CVD. Existing methods analyzing CT images from lung cancer screening for prediction of CVD events or mortality use engineered features extracted from the images combined with patient information. In this work we propose a method that automatically predicts 5-year cardiovascular mortality directly from chest CT scans without the need for hand-crafting image features. A set of 1,583 participants of the National Lung Screening Trial was included (1,188 survivors, 395 non-survivors). Low-dose chest CT images acquired at baseline were analyzed and the follow-up time was 5 years. To limit the analysis to the heart region, the heart was first localized by our previously developed algorithm for organ localization exploiting convolutional neural networks. Thereafter, a convolutional autoencoder was used to encode the identified heart region. Finally, based on the extracted encodings subjects were classified into survivors or non-survivors using a support vector machine classifier. The performance of the method was assessed in eight cross-validation experiments with 1,433 images used for training, 50 for validation and 100 for testing. The method achieved a performance with an area under the ROC curve of 0.72. The results demonstrate that prediction of cardiovascular mortality directly from low-dose screening chest CT scans, without hand-crafted features, is feasible, allowing identification of subjects at risk of fatal CVD events.}, keywords = {}, pubstate = {published}, tppubtype = {inproceedings} } Cardiovascular disease (CVD) is a leading cause of death in the lung cancer screening population. Chest CT scans made in lung cancer screening are suitable for identification of participants at risk of CVD. Existing methods analyzing CT images from lung cancer screening for prediction of CVD events or mortality use engineered features extracted from the images combined with patient information. In this work we propose a method that automatically predicts 5-year cardiovascular mortality directly from chest CT scans without the need for hand-crafting image features. A set of 1,583 participants of the National Lung Screening Trial was included (1,188 survivors, 395 non-survivors). Low-dose chest CT images acquired at baseline were analyzed and the follow-up time was 5 years. To limit the analysis to the heart region, the heart was first localized by our previously developed algorithm for organ localization exploiting convolutional neural networks. Thereafter, a convolutional autoencoder was used to encode the identified heart region. Finally, based on the extracted encodings subjects were classified into survivors or non-survivors using a support vector machine classifier. The performance of the method was assessed in eight cross-validation experiments with 1,433 images used for training, 50 for validation and 100 for testing. The method achieved a performance with an area under the ROC curve of 0.72. The results demonstrate that prediction of cardiovascular mortality directly from low-dose screening chest CT scans, without hand-crafted features, is feasible, allowing identification of subjects at risk of fatal CVD events. |
Abstracts |
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1. | R. Gal, S.G. van Velzen, M.J. Emaus, D.H. van den Bongard, M.L. Gregorowitsch, E.L. Blezer, G. Sofie, N. Lessmann, M.G. Sattler, M.J. Hooning, A.J. Teske, J.J. Penninkhof, H. Meijer, J.P. Pignol, J. Verloop, I. Išgum, H.M. Verkooijen, Bragatston Study Group In: European Journal of Cancer, 138, pp. S6, 2020. @booklet{Gal2020, title = {The risk of cardiovascular disease in irradiated breast cancer patients: The role of cardiac calcifications and adjuvant treatment}, author = {R. Gal, S.G. van Velzen, M.J. Emaus, D.H. van den Bongard, M.L. Gregorowitsch, E.L. Blezer, G. Sofie, N. Lessmann, M.G. Sattler, M.J. Hooning, A.J. Teske, J.J. Penninkhof, H. Meijer, J.P. Pignol, J. Verloop, I. Išgum, H.M. Verkooijen, Bragatston Study Group }, url = {https://www.sciencedirect.com/science/article/pii/S0959804920305438?via%3Dihub}, doi = {10.1016/S0959-8049(20)30543-8}, year = {2020}, date = {2020-10-10}, journal = {European Journal of Cancer}, volume = {138}, pages = {S6}, abstract = {Background: (Neo) adjuvant treatments including anthracyclines, trastuzumab and (left-sided) radiotherapy (RT) are associated with an increased risk of cardiovascular disease (CVD). Breast cancer patients with pre-existing CVD risk factors have the highest risk of treatment induced cardiotoxicity. Coronary artery calcium (CAC) is a strong independent CVD risk factor and can be quantified on dedicated radiotherapy planning CT scans of the chest. Automated assessment of CAC scores in breast cancer patients planned for RT may be helpful in detecting patients at increased CVD risk. In the Bragatston study, we evaluate the association between automated CAC measurement on RT planning CT scans and the risk of CVD in breast cancer patients treated with RT. Methods: In this multicenter retrospective cohort study, CAC scores of breast cancer patients receiving RT between 2005 and 2016 were automatically calculated in planning CT scans using an deep learning algorithm and classified into Agatston categories (0, 1–10, 11–100, 101–399, >400 units). Tumor and treatment characteristics were obtained from the Netherlands Cancer Registry. Data on CVD occurrence were obtained from Dutch Hospital Data and the National Cause of Death Register. Cox proportional hazard regression models were used to evaluate the association between CAC scores and CVD risk. Stratification for left- vs right-sided RT and treatment with vs without anthracyclines was performed. Results: Data from 14,002 patients with a mean age of 58 years (SD = 11) were included. Twenty-nine percent of the patients had a CAC score of >0 (Table). At a median follow-up of 52 months (IQR: 27–82), 8% of the patients (n = 1138) were admitted to the hospital for CVD and 93 patients (1%) died from CVD. After adjustment for age and calendar year at planning CT, the risk of CVD increased with higher CAC, from 5% for patients without CAC to 28% of patients with a CAC score >400. The association between a high CAC score and CVD was strongest in patients treated with anthracyclines (HRCAC >400 = 5.4, 95%CI = 2.6–11.3). Conclusion: CAC detected on the RT planning CT is strongly associated with CVD risk. This finding is relevant for breast cancer patients since early identification of high risk patients enables switching to less cardiotoxic breast cancer treatment (e.g. adaptation of RT target volumes or technique, chemotherapy dose reduction). Also, patients can adopt targeted cardiopreventive interventions (e.g. lifestyle changes, pharmaco-prevention, close monitoring for early detection).}, howpublished = {European Journal of Cancer, 138, pp. S6}, month = {10}, keywords = {}, pubstate = {published}, tppubtype = {booklet} } Background: (Neo) adjuvant treatments including anthracyclines, trastuzumab and (left-sided) radiotherapy (RT) are associated with an increased risk of cardiovascular disease (CVD). Breast cancer patients with pre-existing CVD risk factors have the highest risk of treatment induced cardiotoxicity. Coronary artery calcium (CAC) is a strong independent CVD risk factor and can be quantified on dedicated radiotherapy planning CT scans of the chest. Automated assessment of CAC scores in breast cancer patients planned for RT may be helpful in detecting patients at increased CVD risk. In the Bragatston study, we evaluate the association between automated CAC measurement on RT planning CT scans and the risk of CVD in breast cancer patients treated with RT. Methods: In this multicenter retrospective cohort study, CAC scores of breast cancer patients receiving RT between 2005 and 2016 were automatically calculated in planning CT scans using an deep learning algorithm and classified into Agatston categories (0, 1–10, 11–100, 101–399, >400 units). Tumor and treatment characteristics were obtained from the Netherlands Cancer Registry. Data on CVD occurrence were obtained from Dutch Hospital Data and the National Cause of Death Register. Cox proportional hazard regression models were used to evaluate the association between CAC scores and CVD risk. Stratification for left- vs right-sided RT and treatment with vs without anthracyclines was performed. Results: Data from 14,002 patients with a mean age of 58 years (SD = 11) were included. Twenty-nine percent of the patients had a CAC score of >0 (Table). At a median follow-up of 52 months (IQR: 27–82), 8% of the patients (n = 1138) were admitted to the hospital for CVD and 93 patients (1%) died from CVD. After adjustment for age and calendar year at planning CT, the risk of CVD increased with higher CAC, from 5% for patients without CAC to 28% of patients with a CAC score >400. The association between a high CAC score and CVD was strongest in patients treated with anthracyclines (HRCAC >400 = 5.4, 95%CI = 2.6–11.3). Conclusion: CAC detected on the RT planning CT is strongly associated with CVD risk. This finding is relevant for breast cancer patients since early identification of high risk patients enables switching to less cardiotoxic breast cancer treatment (e.g. adaptation of RT target volumes or technique, chemotherapy dose reduction). Also, patients can adopt targeted cardiopreventive interventions (e.g. lifestyle changes, pharmaco-prevention, close monitoring for early detection). |
2. | S.G.M. van Velzen, J.G. Terry, B.D. de Vos, N Lessmann, S. Nair, A. Correa, H.M. Verkooijen J.J. Carr, I. Išgum In: Radiological Society of North America, 105th Annual Meeting, 2019. @booklet{vanVelzen2020c, title = {Automatic prediction of coronary heart disease events using coronary and thoracic aorta calcium among African Americans in the Jackson Heart study}, author = {S.G.M. van Velzen, J.G. Terry, B.D. de Vos, N Lessmann, S. Nair, A. Correa, H.M. Verkooijen J.J. Carr, I. Išgum}, url = {http://archive.rsna.org/2019/19006976.html}, year = {2019}, date = {2019-12-01}, booktitle = {Radiological Society of North America, 105th Annual Meeting}, abstract = {PURPOSE Coronary artery calcium (CAC) and thoracic aorta calcium (TAC) are predictors of CHD events. Given that CAC and TAC identification is time-consuming, methods for automatic quantification in CT have been developed. Hence, we investigate whether subjects who will experience a CHD event within 5 years from acquisition of cardiac CT can be identified using automatically extracted calcium scores. METHOD AND MATERIALS We included 2532 participants (age 59±11, 31% male) of the Jackson Heart Study without CHD history: 111 participants had a CHD event within 5 years from CT acquisition, defined by death certificates and medical records. For each subject a cardiac CT scan(GE Healthcare Lightspeed 16Pro, 2.5mm slice thickness, 2.5mm increment, 120kVP, 400mAs, ECG-triggered, no contrast) was available. Per-artery Agatston CAC scores (left anterior descending, left circumflex, right coronary artery) and TAC volume were automatically extracted with a previously developed AI algorithm. Scores were log transformed, combined with age and sex and all continuous variables were normalized to zero-mean and unit variance. We evaluated 3 models with 3-fold cross-validation where subjects were classified according to occurrence of CHD event using LASSO regression with 1) age, sex and CAC scores, 2) age, sex and TAC scores, and 3) all variables. Performance was evaluated with the area under the ROC curve (AUC). RESULTS In 1468 (58%) subjects no CAC and in 1240 (49%) no TAC was found. In remaining scans, median (range) CAC score was 78.7(1.6-5562.1): 49.5(0.0-4569.4), 0.0(0.0-2735.3), 3.9(0.0-3242.7) in the LDA, LCX and RCA, respectively. Median TAC volume was 116.8(4.7-7275.9). Prediction of CHD events using Model 1, 2 and 3 resulted in an AUC (95% CI) of 0.721(0.672-0.771), 0.735(0.686-0.785) and 0.727(0.678-0.776). Differences between the ROC curves were not significant (Model 1 and 2: p=0.80; 1 and 3: p=0.29; 2 and 3: p=0.76). CONCLUSION Identification of subjects at risk of a CHD event can be performed using automatically extracted CAC or TAC scores from cardiac CT. CLINICAL RELEVANCE/APPLICATION Prediction of CHD events from cardiac CT using TAC instead of CAC is feasible and may be advantageous in scans acquired without ECG-triggering or low image resolution.}, howpublished = {Radiological Society of North America, 105th Annual Meeting}, month = {12}, keywords = {}, pubstate = {published}, tppubtype = {booklet} } PURPOSE Coronary artery calcium (CAC) and thoracic aorta calcium (TAC) are predictors of CHD events. Given that CAC and TAC identification is time-consuming, methods for automatic quantification in CT have been developed. Hence, we investigate whether subjects who will experience a CHD event within 5 years from acquisition of cardiac CT can be identified using automatically extracted calcium scores. METHOD AND MATERIALS We included 2532 participants (age 59±11, 31% male) of the Jackson Heart Study without CHD history: 111 participants had a CHD event within 5 years from CT acquisition, defined by death certificates and medical records. For each subject a cardiac CT scan(GE Healthcare Lightspeed 16Pro, 2.5mm slice thickness, 2.5mm increment, 120kVP, 400mAs, ECG-triggered, no contrast) was available. Per-artery Agatston CAC scores (left anterior descending, left circumflex, right coronary artery) and TAC volume were automatically extracted with a previously developed AI algorithm. Scores were log transformed, combined with age and sex and all continuous variables were normalized to zero-mean and unit variance. We evaluated 3 models with 3-fold cross-validation where subjects were classified according to occurrence of CHD event using LASSO regression with 1) age, sex and CAC scores, 2) age, sex and TAC scores, and 3) all variables. Performance was evaluated with the area under the ROC curve (AUC). RESULTS In 1468 (58%) subjects no CAC and in 1240 (49%) no TAC was found. In remaining scans, median (range) CAC score was 78.7(1.6-5562.1): 49.5(0.0-4569.4), 0.0(0.0-2735.3), 3.9(0.0-3242.7) in the LDA, LCX and RCA, respectively. Median TAC volume was 116.8(4.7-7275.9). Prediction of CHD events using Model 1, 2 and 3 resulted in an AUC (95% CI) of 0.721(0.672-0.771), 0.735(0.686-0.785) and 0.727(0.678-0.776). Differences between the ROC curves were not significant (Model 1 and 2: p=0.80; 1 and 3: p=0.29; 2 and 3: p=0.76). CONCLUSION Identification of subjects at risk of a CHD event can be performed using automatically extracted CAC or TAC scores from cardiac CT. CLINICAL RELEVANCE/APPLICATION Prediction of CHD events from cardiac CT using TAC instead of CAC is feasible and may be advantageous in scans acquired without ECG-triggering or low image resolution. |
3. | S.G.M. van Velzen, N. Lessmann, M.J. Emaus, H. van den Bongard, H.M. Verkooijen, I. Išgum In: Radiological Society of North America, 105th Annual Meeting, 2019. @booklet{vanVelzen2019, title = {Deep learning for calcium scoring in radiotherapy treatment planning CT scans in breast cancer patients}, author = {S.G.M. van Velzen, N. Lessmann, M.J. Emaus, H. van den Bongard, H.M. Verkooijen, I. Išgum}, url = {http://archive.rsna.org/2019/19002536.html}, year = {2019}, date = {2019-12-01}, booktitle = {Radiological Society of North America, 105th Annual Meeting}, abstract = {PURPOSE Cardiovascular disease (CVD) is an important cause of mortality in breast cancer patients. Coronary artery calcification (CAC) and thoracic aorta calcification (TAC) are strong and independent risk factors for CVD and can be detected and quantified in radiotherapy treatment planning (RTTP) CT. Manual quantification of CAC and TAC is a tedious and time-consuming task. Therefore, we evaluated the performance of an AI system, developed for automatic calcium scoring in low-dose chest CT, in RTTP CT. METHOD AND MATERIALS We included 1409 breast cancer patients (age 56±7 years), who participated in the UMBRELLA cohort and underwent a RTTP CT (Philips Brilliance Big Bore CT, 120kVp, no ECG-triggering, no contrast, 3.0mm slice thickness). In a first step, CAC and TAC were manually annotated in these scans. In a second step, a deep learning algorithm was applied for automated detection of CAC and TAC. A baseline system was trained with 1181 low-dose chest CTs (all major CT vendors, 120/140kVp, no ECG-triggering, no contrast, 1.0-3.0mm slice thickness) from the National Lung Screening Trail (NLST). A RTTP-specific system was trained with the NLST scans and additionally 568 RTTP scans. The remaining 841 RTTP scans were used for evaluation. CAC was quantified as Agatston and volume scores; TAC as volume scores only. Agatston score was stratified into five risk categories: 0, 1-10, 11-100, 101-400, >400. Reproducibility between manual and automatic scores was evaluated with linearly weighted κ (categories) and Intraclass Correlation Coefficient (ICC, volume scores). RESULTS For the baseline system, ICCs were 0.85 (95% CI 0.83-0.87) and 0.98 (0.97-0.98) for CAC and TAC volumes, respectively. ICCs for the RRTP-specific system improved to 0.92 (0.91-0.93) and 0.99 (0.98-0.99) for CAC and TAC volumes, respectively. The baseline and RTTP-specific systems achieved a κ of 0.85 (0.80-0.90) and 0.89 (0.85-0.93). CONCLUSION An AI system trained on low-dose chest CTs allows accurate automatic CAC and TAC scoring in RTTP CT, which improves further upon RTTP-specific training. CLINICAL RELEVANCE/APPLICATION Accurate, fully automatic CVD risk assessment in breast cancer patients from readily available RTTP scans allows cost-effective identification of patients who may benefit from preventive treatment. }, howpublished = {Radiological Society of North America, 105th Annual Meeting}, month = {12}, keywords = {}, pubstate = {published}, tppubtype = {booklet} } PURPOSE Cardiovascular disease (CVD) is an important cause of mortality in breast cancer patients. Coronary artery calcification (CAC) and thoracic aorta calcification (TAC) are strong and independent risk factors for CVD and can be detected and quantified in radiotherapy treatment planning (RTTP) CT. Manual quantification of CAC and TAC is a tedious and time-consuming task. Therefore, we evaluated the performance of an AI system, developed for automatic calcium scoring in low-dose chest CT, in RTTP CT. METHOD AND MATERIALS We included 1409 breast cancer patients (age 56±7 years), who participated in the UMBRELLA cohort and underwent a RTTP CT (Philips Brilliance Big Bore CT, 120kVp, no ECG-triggering, no contrast, 3.0mm slice thickness). In a first step, CAC and TAC were manually annotated in these scans. In a second step, a deep learning algorithm was applied for automated detection of CAC and TAC. A baseline system was trained with 1181 low-dose chest CTs (all major CT vendors, 120/140kVp, no ECG-triggering, no contrast, 1.0-3.0mm slice thickness) from the National Lung Screening Trail (NLST). A RTTP-specific system was trained with the NLST scans and additionally 568 RTTP scans. The remaining 841 RTTP scans were used for evaluation. CAC was quantified as Agatston and volume scores; TAC as volume scores only. Agatston score was stratified into five risk categories: 0, 1-10, 11-100, 101-400, >400. Reproducibility between manual and automatic scores was evaluated with linearly weighted κ (categories) and Intraclass Correlation Coefficient (ICC, volume scores). RESULTS For the baseline system, ICCs were 0.85 (95% CI 0.83-0.87) and 0.98 (0.97-0.98) for CAC and TAC volumes, respectively. ICCs for the RRTP-specific system improved to 0.92 (0.91-0.93) and 0.99 (0.98-0.99) for CAC and TAC volumes, respectively. The baseline and RTTP-specific systems achieved a κ of 0.85 (0.80-0.90) and 0.89 (0.85-0.93). CONCLUSION An AI system trained on low-dose chest CTs allows accurate automatic CAC and TAC scoring in RTTP CT, which improves further upon RTTP-specific training. CLINICAL RELEVANCE/APPLICATION Accurate, fully automatic CVD risk assessment in breast cancer patients from readily available RTTP scans allows cost-effective identification of patients who may benefit from preventive treatment. |